STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chmp6Charged multivesicular body protein 6. (202 aa)    
Predicted Functional Partners:
vps25
Vacuolar protein sorting 25 homolog.
   
 0.983
snf8
Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.
    
 0.981
vps36
Vacuolar protein sorting 36 homolog.
    
 0.975
chmp2a
Charged multivesicular body protein 2A.
   
 0.963
chmp3
Charged multivesicular body protein 3.
    
 0.960
LOC112151226
Charged multivesicular body protein 4C.
    
0.951
ENSOMEP00000021830
Uncharacterized protein.
    
0.940
chmp4b
Charged multivesicular body protein 4Bb.
    
0.940
LOC112152805
Vacuolar protein sorting 4 homolog A; Belongs to the AAA ATPase family.
    
 0.937
VPS4B
Vacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family.
    
 0.931
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.