STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112158753Si:dkey-21c19.3. (724 aa)    
Predicted Functional Partners:
ENSOMEP00000033039
Small ubiquitin-related modifier.
   
 0.976
sumo2
Small ubiquitin-related modifier.
   
 0.969
ENSOMEP00000016531
Ubiquitin-like domain-containing protein.
   
 0.951
LOC112155690
Small ubiquitin like modifier 3b.
   
 0.951
ipo5
Karyopherin (importin) beta 3.
    
 
 0.936
nup153
Nucleoporin 153.
   
 0.881
LOC112142223
ULP_PROTEASE domain-containing protein.
    
0.866
LOC112155342
ULP_PROTEASE domain-containing protein.
    
0.866
senp6
SUMO specific peptidase 6a.
    
0.866
kpnb1
Karyopherin (importin) beta 1.
   
 
 0.861
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.