STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trarg1Trafficking regulator of GLUT4 (SLC2A4) 1a. (183 aa)    
Predicted Functional Partners:
ENSOMEP00000010591
Uncharacterized protein.
   
  0.622
ENSOMEP00000021778
Uncharacterized protein.
   
  0.622
snap47
Synaptosome associated protein 47.
    
 
 0.585
LOC112136949
Transmembrane protein 59-like.
    
 
 0.573
ENSOMEP00000030009
Ribosomal protein L36A; Belongs to the eukaryotic ribosomal protein eL42 family.
    
 0.569
bard1
BRCA1 associated RING domain 1.
    
  0.567
ENSOMEP00000029654
Leucine rich repeat containing 42.
      
 0.541
ENSOMEP00000026519
Uncharacterized protein.
    
  0.539
ENSOMEP00000026529
Uncharacterized protein.
    
  0.539
ENSOMEP00000031320
Basic helix-loop-helix family, member a9.
      
 0.537
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.