STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112144686RAP1A, member of RAS oncogene family b. (185 aa)    
Predicted Functional Partners:
ENSOMEP00000025532
Mitogen-activated protein kinase.
   
 0.975
braf
B-Raf proto-oncogene, serine/threonine kinase.
  
 0.970
rapgef6
Rap guanine nucleotide exchange factor (GEF) 6.
    
 0.945
ENSOMEP00000021523
KRIT1 ankyrin repeat containing.
    
 0.940
ENSOMEP00000022368
Afadin, adherens junction formation factor a.
    
 0.939
ENSOMEP00000032221
Uncharacterized protein.
    
 0.939
ENSOMEP00000012721
Rap guanine nucleotide exchange factor (GEF) 2.
   
 0.937
rapgef1
Uncharacterized protein.
    
 0.935
LOC112162969
Rap guanine nucleotide exchange factor (GEF) 1b.
    
 0.935
LOC112147433
Uncharacterized protein; Belongs to the protein kinase superfamily.
   
 0.932
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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