LOC112158453 protein (Oryzias melastigma) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC112158453

Estrogen-related receptor gamma b. (466 aa)

Predicted Functional Partners:

ENSOMEP00000005014

0.861

ENSOMEP00000013484

0.729

nrip1

0.726

ENSOMEP00000009385

0.712

ENSOMEP00000012190

0.712

ENSOMEP00000014669

0.712

LOC112137842

0.688

hsp90b1

0.641

hspa14

0.612

rpl9

0.602

Your Current Organism:

Oryzias melastigma

NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSOMEP00000005014	ENSOMEP00000009385	ENSOMEP00000005014	ENSOMEP00000009385	Peroxisome proliferator-activated receptor gamma, coactivator 1 alpha.	Nuclear receptor corepressor 1.	0.441
ENSOMEP00000005014	ENSOMEP00000012190	ENSOMEP00000005014	ENSOMEP00000012190	Peroxisome proliferator-activated receptor gamma, coactivator 1 alpha.	Uncharacterized protein.	0.575
ENSOMEP00000005014	ENSOMEP00000013484	ENSOMEP00000005014	ENSOMEP00000013484	Peroxisome proliferator-activated receptor gamma, coactivator 1 alpha.	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.534
ENSOMEP00000005014	LOC112158453	ENSOMEP00000005014	ENSOMEP00000016238	Peroxisome proliferator-activated receptor gamma, coactivator 1 alpha.	Estrogen-related receptor gamma b.	0.861
ENSOMEP00000005014	nrip1	ENSOMEP00000005014	ENSOMEP00000014834	Peroxisome proliferator-activated receptor gamma, coactivator 1 alpha.	Nuclear receptor interacting protein 1b.	0.834
ENSOMEP00000009385	ENSOMEP00000005014	ENSOMEP00000009385	ENSOMEP00000005014	Nuclear receptor corepressor 1.	Peroxisome proliferator-activated receptor gamma, coactivator 1 alpha.	0.441
ENSOMEP00000009385	ENSOMEP00000012190	ENSOMEP00000009385	ENSOMEP00000012190	Nuclear receptor corepressor 1.	Uncharacterized protein.	0.433
ENSOMEP00000009385	ENSOMEP00000013484	ENSOMEP00000009385	ENSOMEP00000013484	Nuclear receptor corepressor 1.	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.684
ENSOMEP00000009385	LOC112158453	ENSOMEP00000009385	ENSOMEP00000016238	Nuclear receptor corepressor 1.	Estrogen-related receptor gamma b.	0.712
ENSOMEP00000009385	nrip1	ENSOMEP00000009385	ENSOMEP00000014834	Nuclear receptor corepressor 1.	Nuclear receptor interacting protein 1b.	0.405
ENSOMEP00000009385	rpl9	ENSOMEP00000009385	ENSOMEP00000010927	Nuclear receptor corepressor 1.	Ribosomal protein L9.	0.478
ENSOMEP00000012190	ENSOMEP00000005014	ENSOMEP00000012190	ENSOMEP00000005014	Uncharacterized protein.	Peroxisome proliferator-activated receptor gamma, coactivator 1 alpha.	0.575
ENSOMEP00000012190	ENSOMEP00000009385	ENSOMEP00000012190	ENSOMEP00000009385	Uncharacterized protein.	Nuclear receptor corepressor 1.	0.433
ENSOMEP00000012190	ENSOMEP00000013484	ENSOMEP00000012190	ENSOMEP00000013484	Uncharacterized protein.	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.684
ENSOMEP00000012190	LOC112158453	ENSOMEP00000012190	ENSOMEP00000016238	Uncharacterized protein.	Estrogen-related receptor gamma b.	0.712
ENSOMEP00000012190	nrip1	ENSOMEP00000012190	ENSOMEP00000014834	Uncharacterized protein.	Nuclear receptor interacting protein 1b.	0.405
ENSOMEP00000012190	rpl9	ENSOMEP00000012190	ENSOMEP00000010927	Uncharacterized protein.	Ribosomal protein L9.	0.478
ENSOMEP00000013484	ENSOMEP00000005014	ENSOMEP00000013484	ENSOMEP00000005014	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Peroxisome proliferator-activated receptor gamma, coactivator 1 alpha.	0.534
ENSOMEP00000013484	ENSOMEP00000009385	ENSOMEP00000013484	ENSOMEP00000009385	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Nuclear receptor corepressor 1.	0.684
ENSOMEP00000013484	ENSOMEP00000012190	ENSOMEP00000013484	ENSOMEP00000012190	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Uncharacterized protein.	0.684