STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSOMEP00000016321Si:dkey-3d4.3. (146 aa)    
Predicted Functional Partners:
utp6
UTP6 small subunit processome component.
   
    0.581
cebpz
CCAAT enhancer binding protein zeta.
   
    0.559
rbm28
RNA binding motif protein 28.
   
    0.504
rpf2
Ribosome production factor 2 homolog.
   
    0.495
bms1
BMS1 ribosome biogenesis factor.
   
    0.481
ncoa6
Nuclear receptor coactivator 6.
    
   0.459
gcc1
GRIP and coiled-coil domain containing 1.
    
   0.459
pno1
Partner of NOB1 homolog.
    
   0.459
ENSOMEP00000034192
PWP2 small subunit processome component.
   
    0.459
mak16
Protein MAK16 homolog; Belongs to the MAK16 family.
   
    0.448
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.