STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ankfn1Ankyrin repeat and fibronectin type III domain containing 1. (1452 aa)    
Predicted Functional Partners:
ENSOMEP00000032211
Bone morphogenetic protein 8a.
    
  0.679
cep72
Centrosomal protein 72.
   
    0.592
LOC112149994
Bone morphogenetic protein 16.
    
  0.549
bmp2
Bone morphogenetic protein 2b.
    
  0.549
bmp4
Bone morphogenetic protein 4.
    
  0.549
bmp5
Bone morphogenetic protein 5.
    
  0.545
LOC112159680
Bone morphogenetic protein 7b.
    
  0.545
ENSOMEP00000030045
TGF_BETA_2 domain-containing protein.
    
  0.545
bmp6
Bone morphogenetic protein 6.
    
  0.545
LOC112145637
Bone morphogenetic protein 7a.
    
  0.542
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.