STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nphs1NPHS1 adhesion molecule, nephrin. (1199 aa)    
Predicted Functional Partners:
LOC112156106
Kirre like nephrin family adhesion molecule 1a.
   
0.968
kirrel2
Kirre like nephrin family adhesion molecule 3, like.
   
0.968
KIRREL3
Kirre like nephrin family adhesion molecule 3.
   
0.968
LOC112150882
Kirre like nephrin family adhesion molecule 1b.
   
0.968
nck2
Cytoplasmic protein.
    
 0.834
nck1
Cytoplasmic protein.
    
 0.834
ENSOMEP00000000147
SH3-domain kinase binding protein 1.
    
 0.829
ENSOMEP00000017345
SH3 domain containing 21.
    
 0.829
cd2ap
CD2-associated protein.
    
 0.829
ENSOMEP00000013980
Tight junction protein 1b; Belongs to the MAGUK family.
    
 0.784
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.