tmem183a protein (Oryzias melastigma) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

tmem183a

Transmembrane protein 183A. (385 aa)

Predicted Functional Partners:

tubgcp2

0.662

ENSOMEP00000009363

0.652

ENSOMEP00000009387

0.652

ENSOMEP00000015987

0.652

ENSOMEP00000016023

0.652

ENSOMEP00000027877

0.652

ENSOMEP00000032288

0.652

RIMS2

0.640

ENSOMEP00000008289

0.640

ENSOMEP00000008322

0.640

Your Current Organism:

Oryzias melastigma

NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSOMEP00000008289	ENSOMEP00000008322	ENSOMEP00000008289	ENSOMEP00000008322	C2 domain-containing protein.	Uncharacterized protein.	0.979
ENSOMEP00000008289	RIMS2	ENSOMEP00000008289	ENSOMEP00000005330	C2 domain-containing protein.	Regulating synaptic membrane exocytosis 2.	0.824
ENSOMEP00000008289	tmem183a	ENSOMEP00000008289	ENSOMEP00000017770	C2 domain-containing protein.	Transmembrane protein 183A.	0.640
ENSOMEP00000008322	ENSOMEP00000008289	ENSOMEP00000008322	ENSOMEP00000008289	Uncharacterized protein.	C2 domain-containing protein.	0.979
ENSOMEP00000008322	RIMS2	ENSOMEP00000008322	ENSOMEP00000005330	Uncharacterized protein.	Regulating synaptic membrane exocytosis 2.	0.827
ENSOMEP00000008322	tmem183a	ENSOMEP00000008322	ENSOMEP00000017770	Uncharacterized protein.	Transmembrane protein 183A.	0.640
ENSOMEP00000009363	ENSOMEP00000009387	ENSOMEP00000009363	ENSOMEP00000009387	Uncharacterized protein.	Uncharacterized protein.	0.992
ENSOMEP00000009363	ENSOMEP00000015987	ENSOMEP00000009363	ENSOMEP00000015987	Uncharacterized protein.	Uncharacterized protein.	0.988
ENSOMEP00000009363	ENSOMEP00000016023	ENSOMEP00000009363	ENSOMEP00000016023	Uncharacterized protein.	Uncharacterized protein.	0.986
ENSOMEP00000009363	ENSOMEP00000027877	ENSOMEP00000009363	ENSOMEP00000027877	Uncharacterized protein.	Uncharacterized protein.	0.996
ENSOMEP00000009363	ENSOMEP00000032288	ENSOMEP00000009363	ENSOMEP00000032288	Uncharacterized protein.	Uncharacterized protein.	0.988
ENSOMEP00000009363	tmem183a	ENSOMEP00000009363	ENSOMEP00000017770	Uncharacterized protein.	Transmembrane protein 183A.	0.652
ENSOMEP00000009387	ENSOMEP00000009363	ENSOMEP00000009387	ENSOMEP00000009363	Uncharacterized protein.	Uncharacterized protein.	0.992
ENSOMEP00000009387	ENSOMEP00000015987	ENSOMEP00000009387	ENSOMEP00000015987	Uncharacterized protein.	Uncharacterized protein.	0.986
ENSOMEP00000009387	ENSOMEP00000016023	ENSOMEP00000009387	ENSOMEP00000016023	Uncharacterized protein.	Uncharacterized protein.	0.995
ENSOMEP00000009387	ENSOMEP00000027877	ENSOMEP00000009387	ENSOMEP00000027877	Uncharacterized protein.	Uncharacterized protein.	0.996
ENSOMEP00000009387	ENSOMEP00000032288	ENSOMEP00000009387	ENSOMEP00000032288	Uncharacterized protein.	Uncharacterized protein.	0.987
ENSOMEP00000009387	tmem183a	ENSOMEP00000009387	ENSOMEP00000017770	Uncharacterized protein.	Transmembrane protein 183A.	0.652
ENSOMEP00000015987	ENSOMEP00000009363	ENSOMEP00000015987	ENSOMEP00000009363	Uncharacterized protein.	Uncharacterized protein.	0.988
ENSOMEP00000015987	ENSOMEP00000009387	ENSOMEP00000015987	ENSOMEP00000009387	Uncharacterized protein.	Uncharacterized protein.	0.986