STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112161834Si:dkey-76k16.6. (276 aa)    
Predicted Functional Partners:
skp2
S-phase kinase-associated protein 2, E3 ubiquitin protein ligase.
   
 0.965
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.939
ccna2
Cyclin A2; Belongs to the cyclin family.
   
 0.852
LOC112153754
Cyclin J-like; Belongs to the cyclin family.
   
 0.852
ccnf
Cyclin F; Belongs to the cyclin family.
   
 0.852
ccna1
Cyclin A1; Belongs to the cyclin family.
   
 0.852
ccnj
Cyclin J; Belongs to the cyclin family.
   
 0.852
ENSOMEP00000002833
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.811
ENSOMEP00000020966
Ribosomal protein S27a.
    
  0.811
rnf7
Ring finger protein 7.
   
 0.789
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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