STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112140029Troponin C type 1b (slow). (172 aa)    
Predicted Functional Partners:
ENSOMEP00000030680
Troponin I type 1a (skeletal, slow).
   
 0.968
ENSOMEP00000029410
Troponin I type 1b (skeletal, slow).
   
 0.966
ENSOMEP00000031375
Troponin T type 2b (cardiac).
   
 0.960
ENSOMEP00000012340
Uncharacterized protein.
   
 0.958
ENSOMEP00000027832
Uncharacterized protein.
   
 0.950
LOC112152909
Troponin I type 2a (skeletal, fast), tandem duplicate 1.
   
 0.930
TNNI2
Uncharacterized protein.
   
 0.930
TNNI2-2
Troponin I2, fast skeletal type.
   
 0.930
ENSOMEP00000009530
Troponin I4b, tandem duplicate 2.
   
 0.908
ENSOMEP00000009584
Uncharacterized protein.
   
 0.908
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.