STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112137351Uncharacterized protein. (1943 aa)    
Predicted Functional Partners:
WDR33
WD repeat domain 33.
   
 0.988
cpsf4
Cleavage and polyadenylation specific factor 4.
    
 0.988
cpsf3
Cleavage and polyadenylation specific factor 3.
    
 0.988
cpsf1
Cleavage and polyadenylation specific factor 1.
    
 0.988
cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
    
 0.988
ENSOMEP00000014217
FIP1 like 1b (S. cerevisiae).
    
 0.986
WDR77
WD repeat domain 77.
   
 0.971
ENSOMEP00000024525
Ubiquitin protein ligase E3D.
    
 0.969
ssu72
SSU72 homolog, RNA polymerase II CTD phosphatase.
    
 0.968
wdr82
WD repeat domain 82.
    
 0.966
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.