STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cutcCutC copper transporter homolog (E. coli). (261 aa)    
Predicted Functional Partners:
LOC112137039
Zgc:103559.
    
  0.701
h6pd
Hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase).
  
  
 0.627
LOC112153801
Glucosamine-6-phosphate isomerase.
 
   
 0.596
ccs
Copper chaperone for superoxide dismutase.
     
 0.575
guf1
Translation factor GUF1, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner.
     
 0.553
otud3
OTU deubiquitinase 3.
     
 0.553
ybey
YbeY metalloendoribonuclease.
     
 0.552
ENSOMEP00000019803
Antioxidant 1 copper chaperone.
      
 0.548
SHC3
SHC adaptor protein 3.
      
 0.537
phf23
PHD finger protein 23b.
      
 0.537
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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