STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPL27ARibosomal protein L27a; Belongs to the universal ribosomal protein uL15 family. (148 aa)    
Predicted Functional Partners:
rpl13
60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.
   
 0.999
ENSOMEP00000002380
Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.
  
 0.999
ENSOMEP00000002517
Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.
  
 
 0.999
ENSOMEP00000002833
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
 0.999
rps16
Ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family.
  
 0.999
rpl35
Ribosomal protein L35.
  
 0.999
rack1
Receptor for activated C kinase 1.
   
 
 0.999
ENSOMEP00000005353
Ribosomal protein L34.
  
 0.999
ENSOMEP00000005743
Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.
   
 0.999
rps5
Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.
  
 
 0.999
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.