STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSOMEP00000023220RIPOR family member 3. (858 aa)    
Predicted Functional Partners:
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
  0.887
ENSOMEP00000035582
Fraser extracellular matrix complex subunit 1.
    
  0.664
ENSOMEP00000024051
Fras1 related extracellular matrix 1a.
    
 0.662
ENSOMEP00000025575
Fras1 related extracellular matrix 1b.
    
 0.662
gle1
GLE1 RNA export mediator.
    
 0.647
GRXCR2
Glutaredoxin and cysteine rich domain containing 2.
   
 
 0.631
rps21
40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family.
   
  0.624
LOC112154894
RAN binding protein 2.
   
 
  0.620
ENSOMEP00000005338
Uncharacterized protein.
    
 0.587
rps15a
Ribosomal protein S15a; Belongs to the universal ribosomal protein uS8 family.
   
 
 0.585
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.