STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mindy3MINDY lysine 48 deubiquitinase 3. (456 aa)    
Predicted Functional Partners:
ubl7
Ubiquitin-like 7b (bone marrow stromal cell-derived).
    
 
 0.503
pamr1
Peptidase domain containing associated with muscle regeneration 1; Belongs to the peptidase S1 family.
      
 0.493
ENSOMEP00000019360
RWD domain containing 1.
      
 0.465
ublcp1
Ubiquitin-like domain containing CTD phosphatase 1.
    
 
 0.413
GHITM
Growth hormone inducible transmembrane protein; Belongs to the BI1 family.
      
 0.408
ENSOMEP00000018694
Zinc finger containing ubiquitin peptidase 1.
      
 0.404
ccdc97
Coiled-coil domain containing 97.
      
 0.400
ENSOMEP00000033332
Clusterin associated protein 1.
      
 0.400
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.