STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSOMEP00000023854UPA_2 domain-containing protein. (590 aa)    
Predicted Functional Partners:
ENSOMEP00000023841
Death domain-containing protein.
 
      0.716
RNF146
Ring finger protein 146.
    
 0.706
ENSOMEP00000033033
Ring finger protein 146.
    
 0.706
LOC112146471
Axin 2 (conductin, axil).
    
 0.660
LOC112137206
Uncharacterized protein.
    
 0.660
AXIN2
Axin 2.
    
 0.660
axin1
Axin 1.
    
 0.660
gak
Cyclin G associated kinase.
  
 0.641
ENSOMEP00000018579
Uncharacterized protein.
   
 0.627
ykt6
YKT6 v-SNARE homolog (S. cerevisiae); Belongs to the synaptobrevin family.
    
  0.612
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.