STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sema3cSema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C; Belongs to the semaphorin family. (764 aa)    
Predicted Functional Partners:
nrp1
Neuropilin; Belongs to the neuropilin family.
    
 0.918
LOC112159039
Plexin A2.
    
0.784
met
MET proto-oncogene, receptor tyrosine kinase.
    
 0.756
ENSOMEP00000021604
Macrophage stimulating 1 receptor b.
    
 0.756
LOC112145561
Macrophage stimulating 1 receptor a.
    
 0.756
PLXNA2
Plexin A2.
    
0.726
ENSOMEP00000015178
Neuropilin; Belongs to the neuropilin family.
    
 
 0.644
NRP1
Neuropilin; Belongs to the neuropilin family.
    
 0.605
ENSOMEP00000012427
Plexin A1a.
    
 0.549
LOC112144749
Sema domain-containing protein.
    
 0.549
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.