STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
esrp1Epithelial splicing regulatory protein 1. (745 aa)    
Predicted Functional Partners:
RBPMS
RNA binding protein, mRNA processing factor.
    
 
 0.631
ENSOMEP00000011752
Heterogeneous nuclear ribonucleoprotein M.
     
 0.539
ENSOMEP00000011934
Uncharacterized protein.
     
 0.493
LOC112160931
RNA binding protein, mRNA processing factor 2b.
    
 
 0.465
LOC112153996
QKI, KH domain containing, RNA binding 2.
    
 0.452
LOC112158982
QKI, KH domain containing, RNA binding a.
    
 0.452
polr2c
Polymerase (RNA) II (DNA directed) polypeptide C.
     
 0.436
ENSOMEP00000033643
Uncharacterized protein.
     
 0.429
wdr44
WD repeat domain 44.
      
 0.404
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.