STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSOMEP00000024117Reverse transcriptase domain-containing protein. (778 aa)    
Predicted Functional Partners:
rag2
Recombination activating gene 2.
   
 0.791
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
  0.744
lyrm4
Si:ch211-152c8.4; Belongs to the complex I LYR family.
    
 0.692
babam1
BRISC and BRCA1 A complex member 1.
    
 0.634
bard1
BRCA1 associated RING domain 1.
    
 0.622
ENSOMEP00000005257
Phospholipase A2.
     
 0.611
rpl21
Ribosomal protein L21.
   
   0.611
ENSOMEP00000002833
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.581
rpl13a
Ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.
   
   0.576
ENSOMEP00000020966
Ribosomal protein S27a.
    
  0.570
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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