STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSOMEP00000024386Uncharacterized protein. (213 aa)    
Predicted Functional Partners:
gabarap
GABA(A) receptor-associated protein b.
    
 0.818
ENSOMEP00000033490
GABA(A) receptor-associated protein like 2.
    
 0.818
LOC112143733
Zgc:92606.
    
 0.788
map1lc3b
Microtubule-associated protein 1 light chain 3 beta.
    
 0.655
map1lc3c
Microtubule-associated protein 1 light chain 3 gamma.
    
 0.618
map1lc3a
Microtubule-associated protein 1 light chain 3 alpha.
    
 0.579
LOC112153285
Microtubule-associated protein 1 light chain 3 gamma, like.
    
 0.579
rusc1
Uncharacterized protein.
  
     0.452
ENSOMEP00000033942
NACHT domain-containing protein.
  
     0.405
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.