STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NUP54Nucleoporin 54. (623 aa)    
Predicted Functional Partners:
LOC112154894
RAN binding protein 2.
   
 0.999
NUP62
Nucleoporin 62.
   
0.999
ENSOMEP00000023192
Nucleoporin 155.
   
 0.998
nup93
Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.
   
 0.998
nup98
Nucleoporin 98.
   
0.997
nup58
Nucleoporin 58.
   
 0.996
nup133
Nucleoporin 133.
   
 0.994
ENSOMEP00000012612
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
   
 0.993
nup107
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.993
nup153
Nucleoporin 153.
   
 0.990
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.