LOC112155938 protein (Oryzias melastigma) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC112155938

EMAP like 3. (1004 aa)

Predicted Functional Partners:

mad2l1

0.839

mad1l1

0.809

bub3

0.798

bub1

0.787

cpsf1

0.783

LOC112154894

0.779

tex10

0.763

taf12

0.760

LOC112142861

0.758

taf10

0.757

Your Current Organism:

Oryzias melastigma

NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC112142861	LOC112155938	ENSOMEP00000029801	ENSOMEP00000024801	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	EMAP like 3.	0.758
LOC112142861	taf10	ENSOMEP00000029801	ENSOMEP00000003914	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	0.999
LOC112142861	taf12	ENSOMEP00000029801	ENSOMEP00000016315	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
LOC112154894	LOC112155938	ENSOMEP00000021053	ENSOMEP00000024801	RAN binding protein 2.	EMAP like 3.	0.779
LOC112154894	bub1	ENSOMEP00000021053	ENSOMEP00000016528	RAN binding protein 2.	BUB1 mitotic checkpoint serine/threonine kinase.	0.739
LOC112154894	bub3	ENSOMEP00000021053	ENSOMEP00000009959	RAN binding protein 2.	BUB3 mitotic checkpoint protein.	0.986
LOC112154894	cpsf1	ENSOMEP00000021053	ENSOMEP00000010559	RAN binding protein 2.	Cleavage and polyadenylation specific factor 1.	0.697
LOC112154894	mad2l1	ENSOMEP00000021053	ENSOMEP00000024000	RAN binding protein 2.	MAD2 mitotic arrest deficient-like 1 (yeast).	0.989
LOC112155938	LOC112142861	ENSOMEP00000024801	ENSOMEP00000029801	EMAP like 3.	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.758
LOC112155938	LOC112154894	ENSOMEP00000024801	ENSOMEP00000021053	EMAP like 3.	RAN binding protein 2.	0.779
LOC112155938	bub1	ENSOMEP00000024801	ENSOMEP00000016528	EMAP like 3.	BUB1 mitotic checkpoint serine/threonine kinase.	0.787
LOC112155938	bub3	ENSOMEP00000024801	ENSOMEP00000009959	EMAP like 3.	BUB3 mitotic checkpoint protein.	0.798
LOC112155938	cpsf1	ENSOMEP00000024801	ENSOMEP00000010559	EMAP like 3.	Cleavage and polyadenylation specific factor 1.	0.783
LOC112155938	mad1l1	ENSOMEP00000024801	ENSOMEP00000033621	EMAP like 3.	Mitotic arrest deficient 1 like 1.	0.809
LOC112155938	mad2l1	ENSOMEP00000024801	ENSOMEP00000024000	EMAP like 3.	MAD2 mitotic arrest deficient-like 1 (yeast).	0.839
LOC112155938	taf10	ENSOMEP00000024801	ENSOMEP00000003914	EMAP like 3.	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	0.757
LOC112155938	taf12	ENSOMEP00000024801	ENSOMEP00000016315	EMAP like 3.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.760
LOC112155938	tex10	ENSOMEP00000024801	ENSOMEP00000023871	EMAP like 3.	Testis expressed 10.	0.763
bub1	LOC112154894	ENSOMEP00000016528	ENSOMEP00000021053	BUB1 mitotic checkpoint serine/threonine kinase.	RAN binding protein 2.	0.739
bub1	LOC112155938	ENSOMEP00000016528	ENSOMEP00000024801	BUB1 mitotic checkpoint serine/threonine kinase.	EMAP like 3.	0.787