STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arl14epADP-ribosylation factor-like 14 effector protein. (220 aa)    
Predicted Functional Partners:
setdb1
SET domain bifurcated histone lysine methyltransferase 1b.
    
 
 0.955
atf7ip2
Fibronectin type-III domain-containing protein.
    
 
 0.906
atf7ip
Activating transcription factor 7 interacting protein.
    
 
 0.906
LOC112145008
DDE_Tnp_1_7 domain-containing protein.
    
 
 0.808
ENSOMEP00000033556
DDE_Tnp_1_7 domain-containing protein.
    
 
 0.808
suox
Sulfite oxidase.
      
 0.597
med21
Mediator of RNA polymerase II transcription subunit 21; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
   
    0.576
KIF21A
Kinesin family member 21A; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
   
  
 0.573
enosf1
Enolase superfamily member 1.
      
 0.566
mpv17l
Uncharacterized protein; Belongs to the peroxisomal membrane protein PXMP2/4 family.
      
 0.566
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.