STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chmp3Charged multivesicular body protein 3. (220 aa)    
Predicted Functional Partners:
chmp2a
Charged multivesicular body protein 2A.
   
0.999
LOC112151226
Charged multivesicular body protein 4C.
   
 0.981
ENSOMEP00000021830
Uncharacterized protein.
   
 0.981
chmp4b
Charged multivesicular body protein 4Bb.
   
 0.981
ENSOMEP00000004214
Chromatin modifying protein 1B.
 
 
 0.980
ENSOMEP00000018040
Charged multivesicular body protein 1A.
 
 
 0.980
ENSOMEP00000018407
annotation not available
   
 0.977
tm9sf1
Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.
   
 0.977
LOC112151024
Charged multivesicular body protein 5b.
   
 0.967
LOC112147540
Charged multivesicular body protein 5a.
   
 0.967
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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