STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSOMEP00000025327Calponin-homology (CH) domain-containing protein. (101 aa)    
Predicted Functional Partners:
ENSOMEP00000002332
Uncharacterized protein.
   
  0.778
LOC112145203
Membrane associated guanylate kinase, WW and PDZ domain containing 3b.
   
  0.778
ENSOMEP00000010700
PDZ domain-containing protein.
   
  0.778
LOC112159001
Uncharacterized protein.
   
  0.778
ENSOMEP00000023254
PDZ domain-containing protein.
   
  0.778
LOC112159975
Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.
   
  0.747
CASK
Calcium/calmodulin dependent serine protein kinase; Belongs to the MAGUK family.
   
  0.747
capzb
F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.
    
 0.708
LOC112153151
Catenin (cadherin-associated protein), alpha 1.
   
 0.673
LOC112154277
Vinculin b.
   
 0.673
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.