STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mei1Meiotic double-stranded break formation protein 1. (1318 aa)    
Predicted Functional Partners:
LOC112160379
Uncharacterized protein.
      
 0.536
rec114
REC114 meiotic recombination protein.
      
 0.534
spo11
SPO11 initiator of meiotic double stranded breaks.
      
 0.512
LOC112136550
HORMA domain containing 1.
      
 0.495
ENSOMEP00000035994
Uncharacterized protein.
      
 0.485
cpeb1
Cytoplasmic polyadenylation element binding protein 1b.
      
 0.483
rec8
REC8 meiotic recombination protein b.
      
 0.475
kctd6
Potassium channel tetramerization domain containing 6b.
      
 0.461
ENSOMEP00000006788
Uncharacterized protein.
      
 0.457
pmpca
Peptidase (mitochondrial processing) alpha; Belongs to the peptidase M16 family.
    
   0.453
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.