STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112154492Piccolo presynaptic cytomatrix protein a. (3981 aa)    
Predicted Functional Partners:
ENSOMEP00000035779
Uncharacterized protein.
   
 0.861
rapgef4
Rap guanine nucleotide exchange factor (GEF) 4.
    
 0.788
LOC112147447
Zgc:171558.
    
 0.788
LOC112154894
RAN binding protein 2.
    
 0.691
ENSOMEP00000024728
Bassoon (presynaptic cytomatrix protein) b.
  
0.644
ENSOMEP00000026519
Uncharacterized protein.
    
  0.644
ENSOMEP00000026529
Uncharacterized protein.
    
  0.644
ENSOMEP00000000337
Regulating synaptic membrane exocytosis 1a.
   
 
0.635
RIMS2
Regulating synaptic membrane exocytosis 2.
   
 
0.635
ENSOMEP00000017420
Regulating synaptic membrane exocytosis 3.
   
 
0.635
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.