STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112142620Solute carrier family 8 member 4a; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (946 aa)    
Predicted Functional Partners:
LOC112147433
Uncharacterized protein; Belongs to the protein kinase superfamily.
   
 
  0.891
prkaca
Uncharacterized protein; Belongs to the protein kinase superfamily.
   
 
  0.890
ENSOMEP00000035582
Fraser extracellular matrix complex subunit 1.
   
0.784
LOC112146515
Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a; Belongs to the protein kinase superfamily.
   
 
  0.626
prkacb
Uncharacterized protein; Belongs to the protein kinase superfamily.
   
 
  0.626
LGALS4
Galectin.
   
  
 0.556
LOC112155482
Uncharacterized protein.
   
  
 0.554
cunh19orf67
Si:ch211-214c7.5.
      
 0.554
ENSOMEP00000009584
Uncharacterized protein.
   
  
 0.554
ENSOMEP00000009708
Troponin I4a.
   
  
 0.554
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.