STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112156380Deltex 4, E3 ubiquitin ligase a. (775 aa)    
Predicted Functional Partners:
ENSOMEP00000008043
Notch receptor 1b.
    
 0.939
LOC112163451
Notch receptor 1a.
    
 0.939
LOC112136930
Notch receptor 2.
    
 0.926
LOC112146115
Notch receptor 3.
    
 0.921
ENSOMEP00000012874
E3 ubiquitin-protein ligase.
    
 0.774
LOC112144968
E3 ubiquitin-protein ligase.
    
 0.774
wwp1
WW domain containing E3 ubiquitin protein ligase 1.
    
 0.774
ENSOMEP00000033446
HECT domain-containing protein.
    
 0.774
ENSOMEP00000020966
Ribosomal protein S27a.
    
  0.753
ENSOMEP00000035400
Ubiquitin-like domain-containing protein.
    
 0.713
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.