STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHATCarn_acyltransf domain-containing protein; Belongs to the carnitine/choline acetyltransferase family. (633 aa)    
Predicted Functional Partners:
gpcpd1
Glycerophosphocholine phosphodiesterase 1.
   
 
 0.910
chka
Choline kinase alpha.
 
 
 
  0.893
phospho1
Phosphatase, orphan 1.
     
 0.892
LOC112162239
Choline O-acetyltransferase a; Belongs to the carnitine/choline acetyltransferase family.
  
  
 
0.891
LOC112152336
Choline kinase beta.
 
 
 
  0.890
LOC112154155
Uncharacterized protein.
     
 0.889
LOC112150106
Sterol carrier protein 2b.
   
 0.845
scp2
Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.
   
 0.845
ENSOMEP00000024663
Hydroxysteroid dehydrogenase like 2.
   
 0.816
cpt2
Carnitine palmitoyltransferase 2; Belongs to the carnitine/choline acetyltransferase family.
  
0.801
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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