STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112146625Homeobox B13a. (321 aa)    
Predicted Functional Partners:
ENSOMEP00000021375
Uncharacterized protein.
  
 
 
 0.775
ENSOMEP00000007753
Uncharacterized protein.
    
 
 0.722
LOC112157656
Meis homeobox 2b.
    
 
 0.722
meis2
Meis homeobox 2a.
    
 
 0.722
LOC112147407
Pre-B-cell leukemia homeobox 1a.
    
 
 0.508
LOC112146314
Pre-B-cell leukemia transcription factor 4.
    
 
 0.508
pbx3
Homeobox domain-containing protein.
    
 
 0.508
LOC112150672
Homeobox domain-containing protein.
    
 
 0.508
LOC112136611
Pre-B-cell leukemia homeobox 2.
    
 
 0.508
hoxb2
Homeobox B2a.
  
 
 
0.465
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.