STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112158912Si:ch211-251b21.1; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (460 aa)    
Predicted Functional Partners:
LOC112141341
Uncharacterized protein.
  
 
0.479
ENSOMEP00000029008
Glutamate receptor, ionotropic, AMPA 1a.
  
 
0.479
LOC112148930
Uncharacterized protein.
   
0.463
LOC112163519
Glutamate receptor, ionotropic, N-methyl D-aspartate 1a.
   
0.463
ENSOMEP00000013530
LITAF domain-containing protein.
   
 0.463
LOC112142662
Uncharacterized protein.
    
0.460
LOC112149221
Glutamate receptor, ionotropic, AMPA 4a.
    
0.460
LOC112138865
Glutamate receptor, ionotropic, AMPA 3a.
    
0.460
LOC112153254
Uncharacterized protein.
    
0.460
GRIA2
Glutamate ionotropic receptor AMPA type subunit 2.
    
0.460
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.