STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
clptm1CLPTM1 regulator of GABA type A receptor forward trafficking. (628 aa)    
Predicted Functional Partners:
phgdh
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
     
 0.742
pgk1
Phosphoglycerate kinase.
    
 0.723
ENSOMEP00000008238
Uncharacterized protein.
    
 0.720
pc
Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.
     
 0.717
pdhb
Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
     
 0.703
mad2l1
MAD2 mitotic arrest deficient-like 1 (yeast).
    
   0.698
mad1l1
Mitotic arrest deficient 1 like 1.
    
   0.692
hao2
Hydroxyacid oxidase 2 (long chain).
     
 0.681
ENSOMEP00000030758
Hydroxyacid oxidase (glycolate oxidase) 1.
     
 0.681
LOC112141173
Glucose-6-phosphate isomerase; Belongs to the GPI family.
     
 0.664
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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