STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSOMEP00000029919Nuclear receptor coactivator 5. (630 aa)    
Predicted Functional Partners:
LOC112154894
RAN binding protein 2.
   
 0.999
NUP54
Nucleoporin 54.
   
 0.979
rae1
Ribonucleic acid export 1.
   
 0.978
sec13
SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family.
    
 0.978
nup93
Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.
   
 0.978
ENSOMEP00000025339
SEH1-like (S. cerevisiae); Belongs to the WD repeat SEC13 family.
   
 0.977
nup214
Nup214_FG domain-containing protein.
   
 0.976
nup133
Nucleoporin 133.
   
 0.976
nup107
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.976
ENSOMEP00000012612
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
   
 0.975
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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