STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112141852Microfibril associated protein 4. (240 aa)    
Predicted Functional Partners:
met
MET proto-oncogene, receptor tyrosine kinase.
   
 
  0.606
ENSOMEP00000021604
Macrophage stimulating 1 receptor b.
   
 
  0.606
LOC112145561
Macrophage stimulating 1 receptor a.
   
 
  0.606
ENSOMEP00000030404
KAT8 regulatory NSL complex subunit 2.
    
  0.578
mcrs1
Microspherule protein 1.
    
 0.521
sigirr
Single immunoglobulin and toll-interleukin 1 receptor (TIR) domain.
   
 0.514
kansl3
KAT8 regulatory NSL complex subunit 3.
    
  0.507
ENSOMEP00000012961
Testis expressed 30.
    
  0.507
ENSOMEP00000003717
Lysine (K)-specific methyltransferase 2E.
    
  0.481
ENSOMEP00000029329
Uncharacterized protein.
    
  0.481
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.