STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSOMEP00000031085PHD finger protein 6. (363 aa)    
Predicted Functional Partners:
rbbp4
Retinoblastoma binding protein 4.
   
 0.827
LOC112152890
Retinoblastoma binding protein 4, like.
   
 0.827
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
    
 0.783
rbbp5
Retinoblastoma binding protein 5.
   
 0.782
ENSOMEP00000018932
Embryonic ectoderm development.
   
 0.740
ENSOMEP00000003686
Histone-lysine N-methyltransferase, H3 lysine-79 specific.
   
 0.686
mphosph8
Chromo domain-containing protein.
    
 0.682
LOC112146215
VEFS-Box domain-containing protein.
   
 0.674
suz12
SUZ12 polycomb repressive complex 2 subunit b.
   
 0.674
setbp1
SET binding protein 1.
   
 0.653
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.