STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tsr3Probable ribosome biogenesis protein; Probable pre-rRNA processing protein involved in ribosome biogenesis. (289 aa)    
Predicted Functional Partners:
LOC112138852
Uncharacterized protein.
   
  
 0.724
LOC112158928
TSR2 ribosome maturation factor.
   
  
 0.724
bud23
BUD23 rRNA methyltransferase and ribosome maturation factor.
   
  
 0.668
nob1
NIN1 (RPN12) binding protein 1 homolog.
   
  
 0.637
dus2
Dihydrouridine synthase 2.
   
  
 0.614
emg1
EMG1 N1-specific pseudouridine methyltransferase.
   
  
 0.606
mettl27
Methyltransferase like 27.
   
  
 0.598
tsr1
TSR1 ribosome maturation factor.
   
  
 0.597
dus4l
tRNA-dihydrouridine synthase; Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs; Belongs to the dus family.
   
  
 0.591
dus1l
Dihydrouridine synthase 1-like (S. cerevisiae).
   
  
 0.580
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.