STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSOMEP00000032983Vacuolar protein sorting 13 homolog C. (3079 aa)    
Predicted Functional Partners:
vps35
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.596
gak
Cyclin G associated kinase.
    
 
 0.586
dnajc6
DnaJ (Hsp40) homolog, subfamily C, member 6.
    
 
 0.545
ENSOMEP00000012755
Synaptojanin 1.
    
 
 0.530
chtf18
AAA domain-containing protein.
    
   0.478
ENSOMEP00000001602
ATPase cation transporting 13A2.
   
 
 0.470
vps39
VPS39 subunit of HOPS complex.
   
 
 0.463
cetn3
Centrin 3.
    
 
 0.444
ENSOMEP00000000292
Baculoviral IAP repeat containing 6.
   
 
 0.442
ENSOMEP00000033614
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
 
 0.442
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.