ENSOMEP00000033255 protein (Oryzias melastigma)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSOMEP00000033255

Mitochondrial ribosomal protein L23. (194 aa)

Predicted Functional Partners:

mrpl41

0.999

mrpl19

0.999

mrpl13

0.999

ENSOMEP00000001166

0.998

mrps16

0.998

mrpl30

0.998

mrpl47

0.998

ENSOMEP00000032804

0.998

ENSOMEP00000033413

0.998

mrpl46

0.997

Your Current Organism:

Oryzias melastigma

NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSOMEP00000001166	ENSOMEP00000032804	ENSOMEP00000001166	ENSOMEP00000032804	Mitochondrial ribosomal protein L15.	Mitochondrial ribosomal protein L27.	0.999
ENSOMEP00000001166	ENSOMEP00000033255	ENSOMEP00000001166	ENSOMEP00000033255	Mitochondrial ribosomal protein L15.	Mitochondrial ribosomal protein L23.	0.998
ENSOMEP00000001166	ENSOMEP00000033413	ENSOMEP00000001166	ENSOMEP00000033413	Mitochondrial ribosomal protein L15.	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.999
ENSOMEP00000001166	mrpl13	ENSOMEP00000001166	ENSOMEP00000028587	Mitochondrial ribosomal protein L15.	Mitochondrial ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.	0.999
ENSOMEP00000001166	mrpl19	ENSOMEP00000001166	ENSOMEP00000025440	Mitochondrial ribosomal protein L15.	Mitochondrial ribosomal protein L19.	0.999
ENSOMEP00000001166	mrpl30	ENSOMEP00000001166	ENSOMEP00000028488	Mitochondrial ribosomal protein L15.	Mitochondrial ribosomal protein L30.	0.993
ENSOMEP00000001166	mrpl41	ENSOMEP00000001166	ENSOMEP00000020821	Mitochondrial ribosomal protein L15.	Mitochondrial ribosomal protein L41.	0.993
ENSOMEP00000001166	mrpl46	ENSOMEP00000001166	ENSOMEP00000016294	Mitochondrial ribosomal protein L15.	Mitochondrial ribosomal protein L46.	0.998
ENSOMEP00000001166	mrpl47	ENSOMEP00000001166	ENSOMEP00000030088	Mitochondrial ribosomal protein L15.	Mitochondrial ribosomal protein L47.	0.996
ENSOMEP00000001166	mrps16	ENSOMEP00000001166	ENSOMEP00000019684	Mitochondrial ribosomal protein L15.	Mitochondrial ribosomal protein S16.	0.999
ENSOMEP00000032804	ENSOMEP00000001166	ENSOMEP00000032804	ENSOMEP00000001166	Mitochondrial ribosomal protein L27.	Mitochondrial ribosomal protein L15.	0.999
ENSOMEP00000032804	ENSOMEP00000033255	ENSOMEP00000032804	ENSOMEP00000033255	Mitochondrial ribosomal protein L27.	Mitochondrial ribosomal protein L23.	0.998
ENSOMEP00000032804	ENSOMEP00000033413	ENSOMEP00000032804	ENSOMEP00000033413	Mitochondrial ribosomal protein L27.	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.999
ENSOMEP00000032804	mrpl13	ENSOMEP00000032804	ENSOMEP00000028587	Mitochondrial ribosomal protein L27.	Mitochondrial ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.	0.999
ENSOMEP00000032804	mrpl19	ENSOMEP00000032804	ENSOMEP00000025440	Mitochondrial ribosomal protein L27.	Mitochondrial ribosomal protein L19.	0.999
ENSOMEP00000032804	mrpl30	ENSOMEP00000032804	ENSOMEP00000028488	Mitochondrial ribosomal protein L27.	Mitochondrial ribosomal protein L30.	0.990
ENSOMEP00000032804	mrpl41	ENSOMEP00000032804	ENSOMEP00000020821	Mitochondrial ribosomal protein L27.	Mitochondrial ribosomal protein L41.	0.993
ENSOMEP00000032804	mrpl46	ENSOMEP00000032804	ENSOMEP00000016294	Mitochondrial ribosomal protein L27.	Mitochondrial ribosomal protein L46.	0.998
ENSOMEP00000032804	mrpl47	ENSOMEP00000032804	ENSOMEP00000030088	Mitochondrial ribosomal protein L27.	Mitochondrial ribosomal protein L47.	0.994
ENSOMEP00000032804	mrps16	ENSOMEP00000032804	ENSOMEP00000019684	Mitochondrial ribosomal protein L27.	Mitochondrial ribosomal protein S16.	0.999