STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112150582Protein tyrosine phosphatase receptor type Sa. (1954 aa)    
Predicted Functional Partners:
il1rap
Uncharacterized protein.
    
 0.846
ntrk3
Tyrosine-protein kinase receptor.
   
 0.818
ENSOMEP00000019166
Tyrosine-protein kinase receptor.
   
0.818
ENSOMEP00000018003
SLIT and NTRK-like family, member 2.
    
 0.786
SLITRK1
SLIT and NTRK like family member 1.
    
 0.781
ctnnb1
Catenin (cadherin-associated protein), beta 1.
   
 0.759
ntrk1
Tyrosine-protein kinase receptor.
    
 0.742
ntrk2
Tyrosine-protein kinase receptor.
    
 0.742
LOC112163033
Neurotrophic tyrosine kinase, receptor, type 2b.
    
 0.742
LRFN5
Leucine rich repeat and fibronectin type III domain containing 5a.
    
 0.712
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.