Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
IW16_03545Patatin; Derived by automated computational analysis using gene prediction method: Protein Homology. (718 aa)    
Predicted Functional Partners:
IW16_03550
rRNA maturation factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.812
IW16_03540
Alanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.788
IW16_03535
Thymidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.492
IW16_03555
tRNA uridine 5-carboxymethylaminomethyl modification protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.483
IW16_16175
Orotate phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.476
IW16_20420
Aminodeoxychorismate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.461
IW16_24930
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.460
IW16_02760
Thioester reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.458
IW16_18050
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.452
IW16_03530
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.431
Your Current Organism:
Chryseobacterium vrystaatense
NCBI taxonomy Id: 307480
Other names: C. vrystaatense, CCUG 50970, Chryseobacterium sp. R-23533, Chryseobacterium sp. R-23566, Chryseobacterium vrystaatense de Beer et al. 2005 emend. Montero-Calasanz et al. 2014, LMG 22846, LMG:22846
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