Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
IW16_04205Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (403 aa)    
Predicted Functional Partners:
IW16_04210
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.700
IW16_03895
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.675
IW16_04215
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.632
IW16_04225
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.623
IW16_11385
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.562
IW16_04200
Glucokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.550
IW16_00770
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.533
IW16_18470
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.513
IW16_00780
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.468
IW16_00245
Secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.460
Your Current Organism:
Chryseobacterium vrystaatense
NCBI taxonomy Id: 307480
Other names: C. vrystaatense, CCUG 50970, Chryseobacterium sp. R-23533, Chryseobacterium sp. R-23566, Chryseobacterium vrystaatense de Beer et al. 2005 emend. Montero-Calasanz et al. 2014, LMG 22846, LMG:22846
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