Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
IW16_05965Nucleotidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (357 aa)    
Predicted Functional Partners:
IW16_05780
Nucleotidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.921
IW16_05960
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.671
IW16_08905
Ribonucleoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.617
IW16_05955
Guanylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.609
IW16_02725
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.529
IW16_05950
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.528
IW16_16600
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.500
IW16_05945
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.487
IW16_06560
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.475
IW16_19365
phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.438
Your Current Organism:
Chryseobacterium vrystaatense
NCBI taxonomy Id: 307480
Other names: C. vrystaatense, CCUG 50970, Chryseobacterium sp. R-23533, Chryseobacterium sp. R-23566, Chryseobacterium vrystaatense de Beer et al. 2005 emend. Montero-Calasanz et al. 2014, LMG 22846, LMG:22846
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