Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
IW16_06950Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)    
Predicted Functional Partners:
IW16_06945
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.811
IW16_06940
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.809
IW16_06955
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.688
IW16_06960
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
0.685
IW16_06970
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.685
IW16_06965
Conjugal transfer protein TraG; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.683
IW16_06975
Plasmid transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.683
IW16_06920
Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.674
IW16_06935
Conjugal transfer protein TraK; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.671
IW16_06925
Conjugal transfer protein TraM; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.667
Your Current Organism:
Chryseobacterium vrystaatense
NCBI taxonomy Id: 307480
Other names: C. vrystaatense, CCUG 50970, Chryseobacterium sp. R-23533, Chryseobacterium sp. R-23566, Chryseobacterium vrystaatense de Beer et al. 2005 emend. Montero-Calasanz et al. 2014, LMG 22846, LMG:22846
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