STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IW16_08210RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (401 aa)    
Predicted Functional Partners:
IW16_22885
50S ribosomal protein L10; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.977
IW16_00990
50S ribosomal protein L23; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.964
IW16_00910
50S ribosomal protein L30; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.957
IW16_00975
50S ribosomal protein L22; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.944
IW16_00960
50S ribosomal protein L29; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.925
IW16_00005
Antibiotic resistance protein VanZ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.921
IW16_06485
DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.894
IW16_10155
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.894
IW16_11040
DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.894
IW16_12850
RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.894
Your Current Organism:
Chryseobacterium vrystaatense
NCBI taxonomy Id: 307480
Other names: C. vrystaatense, CCUG 50970, Chryseobacterium sp. R-23533, Chryseobacterium sp. R-23566, Chryseobacterium vrystaatense de Beer et al. 2005 emend. Montero-Calasanz et al. 2014, LMG 22846, LMG:22846
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.