Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
IW16_09485DNA mismatch repair protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (164 aa)    
Predicted Functional Partners:
IW16_05595
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.768
IW16_20420
Aminodeoxychorismate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.764
IW16_16175
Orotate phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.763
IW16_04545
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.747
IW16_18050
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.747
IW16_08345
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.746
IW16_01485
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.745
IW16_12710
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.740
IW16_14190
Prenyltransferase UbiA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.737
IW16_15385
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.729
Your Current Organism:
Chryseobacterium vrystaatense
NCBI taxonomy Id: 307480
Other names: C. vrystaatense, CCUG 50970, Chryseobacterium sp. R-23533, Chryseobacterium sp. R-23566, Chryseobacterium vrystaatense de Beer et al. 2005 emend. Montero-Calasanz et al. 2014, LMG 22846, LMG:22846
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