STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IW16_10445ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (292 aa)    
Predicted Functional Partners:
IW16_10450
Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.994
IW16_10455
Heme ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.991
IW16_10465
Heme ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.989
IW16_12165
Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.973
IW16_24950
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.972
IW16_24955
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.863
IW16_10460
Methyltransferase type 11; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.781
IW16_10440
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.728
IW16_10435
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.724
IW16_12170
Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.630
Your Current Organism:
Chryseobacterium vrystaatense
NCBI taxonomy Id: 307480
Other names: C. vrystaatense, CCUG 50970, Chryseobacterium sp. R-23533, Chryseobacterium sp. R-23566, Chryseobacterium vrystaatense de Beer et al. 2005 emend. Montero-Calasanz et al. 2014, LMG 22846, LMG:22846
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.