STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IW16_262603-phytase; Derived by automated computational analysis using gene prediction method: Protein Homology. (343 aa)    
Predicted Functional Partners:
IW16_26255
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.969
IW16_12125
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.766
IW16_03970
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.762
IW16_05550
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.612
IW16_10200
Metallophosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.475
IW16_16535
Alkaline phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.455
IW16_07905
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.442
Your Current Organism:
Chryseobacterium vrystaatense
NCBI taxonomy Id: 307480
Other names: C. vrystaatense, CCUG 50970, Chryseobacterium sp. R-23533, Chryseobacterium sp. R-23566, Chryseobacterium vrystaatense de Beer et al. 2005 emend. Montero-Calasanz et al. 2014, LMG 22846, LMG:22846
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.