STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F751_1025Retinol dehydrogenase 11. (286 aa)    
Predicted Functional Partners:
F751_6249
Chromatin structure-remodeling complex subunit snf21.
   
 
 0.489
F751_6393
Septum formation protein Maf.
   
 
 0.468
F751_2439
Bifunctional dihydrofolate reductase-thymidylate synthase.
   
  
 0.426
F751_1026
Oxygen-evolving enhancer protein 2, chloroplastic.
   
   0.408
F751_2048
Putative malonyl-CoA-acyl carrier protein transacylase, mitochondrial.
  
 
 0.405
F751_5194
Malonyl-CoA-acyl carrier protein transacylase, mitochondrial.
  
 
 0.405
Your Current Organism:
Auxenochlorella protothecoides
NCBI taxonomy Id: 3075
Other names: A. protothecoides, Auxenochlorella protothecoides (Krueger) Kalina & M.Puncoch., Chlorella protothecoides, Chlorella protothecoides Krueger, Chlorella protothecoides var. galactophila, Chlorella protothecoides var. galactophila Shihira & R.W.Krauss, SAG 211-7a
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